PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013618713.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 280aa    MW: 31303.2 Da    PI: 5.2757
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013618713.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+ + +++G g W+t +++ g++R++k+c++rw +yl
   XP_013618713.1 14 KGAWTPEEDQKLIAYLQLHGEGGWRTLPEKAGLKRCGKSCRLRWANYL 61
                     79********************************************97 PP

2Myb_DNA-binding50.74.1e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg +T+eEd+ ++++++++G++ W++Ia+ +  gRt++++k++w++ 
   XP_013618713.1  67 RGEFTPEEDDTIIKLHALMGNK-WAAIASSLA-GRTDNDIKNYWNTN 111
                      899*******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.153961IPR017930Myb domain
SuperFamilySSF466897.86E-3011108IPR009057Homeodomain-like
SMARTSM007172.4E-131363IPR001005SANT/Myb domain
PfamPF002499.6E-161461IPR001005SANT/Myb domain
CDDcd001676.54E-101661No hitNo description
PROSITE profilePS5129425.34262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2665117IPR009057Homeodomain-like
SMARTSM007177.5E-1766114IPR001005SANT/Myb domain
PfamPF002492.9E-1567112IPR001005SANT/Myb domain
CDDcd001671.10E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MVRTPCCKEE GIKKGAWTPE EDQKLIAYLQ LHGEGGWRTL PEKAGLKRCG KSCRLRWANY  60
LRPDIKRGEF TPEEDDTIIK LHALMGNKWA AIASSLAGRT DNDIKNYWNT NLKKRLKQKG  120
LDPITHKPIN PTGFEPVNHK LGSSGSARLL NRVAKKYAVD VNRDLLTGII IGKSTIIAED  180
SQNSSDTEHS TSTLLKTVAK PSARATSPGS FSDDLDVFFS NEEISDMYTN VDNVGLMEEL  240
KSILSYAGDI KDSPEYNVSD EMEFLDSWNE EDGLDLENCF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27141167108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKRLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6156040.0HQ615604.1 Brassica rapa subsp. pekinensis cultivar A5-2-1 MYB34-3 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618713.10.0PREDICTED: transcription factor MYB34-like
SwissprotO643991e-147MYB34_ARATH; Transcription factor MYB34
TrEMBLA0A0D3AY350.0A0A0D3AY35_BRAOL; Uncharacterized protein
STRINGBra029349.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93311637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60890.11e-148myb domain protein 34